NLM DIR Seminar Schedule
UPCOMING SEMINARS
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April 8, 2025 Jaya Srivastava
Leveraging a deep learning model to assess the impact of regulatory variants on traits and diseases -
April 15, 2025 Pascal Mutz
TBD -
April 18, 2025 Valentina Boeva, Department of Computer Science, ETH Zurich
Decoding tumor heterogeneity: computational methods for scRNA-seq and spatial omics -
April 22, 2025 Stanley Liang
TBD -
April 29, 2025 MG Hirsch
TBD
RECENT SEMINARS
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April 1, 2025 Roman Kogay
Horizontal transfer of bacterial operons into eukaryote genomes -
March 25, 2025 Yifan Yang
Adversarial Manipulation and Data Memorization in Large Language Models for Medicine -
March 11, 2025 Sofya Garushyants
Tmn – bacterial anti-phage defense system -
March 4, 2025 Sanasar Babajanyan
Evolution of antivirus defense in prokaryotes depending on the environmental virus load -
Feb. 25, 2025 Zhizheng Wang
GeneAgent: Self-verification Language Agent for Gene Set Analysis using Domain Databases
Scheduled Seminars on April 11, 2023
Contact NLMDIRSeminarScheduling@mail.nih.gov with questions about this seminar.
Abstract:
Age-related macular degeneration (AMD) is one of the leading causes of vision loss in the elderly. Late-stage AMD can develop into atrophic or neovascular AMD where atrophic AMD is the most common form. Geographic atrophy (GA) is the primary lesion in late atrophic AMD and is usually accompanied by very poor central vision. GA is predicted to affect more than five million people worldwide. Fast and accurate identification of eyes with GA could lead to improved management of the disease. GA can be detected on 2D imaging modalities, e.g., fundus autofluorescence (FAF) images and color fundus photographs (CFP). However, these modalities provide no details about the underlying layer structures and how they change. In this work, we use optical coherence tomography (OCT) volumetric scans for the detection task. OCT scans have the advantages of being easily available and providing volumetric context. For this purpose, we developed 3D convolutional neural networks (CNNs) as well as 2D CNNs. A dataset of 1,284 SD OCT scans from 311 participants was used to train networks, where cross-validation was used for evaluation with each testing set, containing no participant from the corresponding training set. En-face heatmaps and important regions at the B-scan level were used to visualize the outputs of networks, and three ophthalmologists graded the presence or absence of GA in them to assess the explainability of its detections. Compared to other networks, 3D CNNs achieved the best metrics, with the best accuracy of 0.93, AUC of 0.94, and APR of 0.91, and received the best gradings, of 0.98 and 0.68 on the en face heatmap and B-scan grading tasks, respectively.