NLM DIR Seminar Schedule
UPCOMING SEMINARS
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July 15, 2025 Noam Rotenberg
Cell phenotypes in the biomedical literature: a systematic analysis and the NLM CellLink text mining corpus
RECENT SEMINARS
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July 3, 2025 Matthew Diller
Using Ontologies to Make Knowledge Computable -
July 1, 2025 Yoshitaka Inoue
Graph-Aware Interpretable Drug Response Prediction and LLM-Driven Multi-Agent Drug-Target Interaction Prediction -
June 10, 2025 Aleksandra Foerster
Interactions at pre-bonding distances and bond formation for open p-shell atoms: a step toward biomolecular interaction modeling using electrostatics -
June 3, 2025 MG Hirsch
Interactions among subclones and immunity controls melanoma progression -
May 29, 2025 Harutyun Sahakyan
In silico evolution of globular protein folds from random sequences
Scheduled Seminars on Oct. 1, 2024
Contact NLMDIRSeminarScheduling@mail.nih.gov with questions about this seminar.
Abstract:
Biomolecular systems are dense collections of charged molecules, many of them quite complex, embedded in a solution of water and ions of various types. Consequently, electrostatic interactions are extremely important in determining the behavior of these systems. Despite many decades of research, accurate and rigorous calculation of these interactions is still a major hurdle. We will apply a recently developed theory, rigorous at the Debye-Hückel level, of electrostatic interactions in the presence of ions to a pair of model systems: 1) a system of charged polarizable spheres with arbitrary sizes, charge distributions (arbitrary multipole moments), and dielectric constants; and 2) a system of charged planes that represent the close approach of charged biomolecules. We will show that asymmetric screening, the extra repulsion between charged dielectric objects in a high dielectric constant solvent that was discovered in the ion-free situation, is still present when ions are included. We will discuss the importance of many-body effects, which are included in the present theory but not in commonly used pairwise approximations. We will also briefly indicate a pathway to investigating ion-specific effects (the Hoffmeister effect) in which ions with the same charge have different behavior. And we will also briefly mention efforts to extend the comparison of classical electrostatic interactions to quantum calculations from S type atoms to more a more general setting.