NLM DIR Seminar Schedule
UPCOMING SEMINARS
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April 8, 2025 Jaya Srivastava
TBD -
April 15, 2025 Pascal Mutz
TBD -
April 18, 2025 Valentina Boeva, Department of Computer Science, ETH Zurich
Decoding tumor heterogeneity: computational methods for scRNA-seq and spatial omics -
April 22, 2025 Stanley Liang
TBD -
April 29, 2025 MG Hirsch
TBD
RECENT SEMINARS
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April 1, 2025 Roman Kogay
Horizontal transfer of bacterial operons into eukaryote genomes -
March 25, 2025 Yifan Yang
Adversarial Manipulation and Data Memorization in Large Language Models for Medicine -
March 11, 2025 Sofya Garushyants
Tmn – bacterial anti-phage defense system -
March 4, 2025 Sanasar Babajanyan
Evolution of antivirus defense in prokaryotes depending on the environmental virus load -
Feb. 25, 2025 Zhizheng Wang
GeneAgent: Self-verification Language Agent for Gene Set Analysis using Domain Databases
Scheduled Seminars on Oct. 1, 2024
Contact NLMDIRSeminarScheduling@mail.nih.gov with questions about this seminar.
Abstract:
Biomolecular systems are dense collections of charged molecules, many of them quite complex, embedded in a solution of water and ions of various types. Consequently, electrostatic interactions are extremely important in determining the behavior of these systems. Despite many decades of research, accurate and rigorous calculation of these interactions is still a major hurdle. We will apply a recently developed theory, rigorous at the Debye-Hückel level, of electrostatic interactions in the presence of ions to a pair of model systems: 1) a system of charged polarizable spheres with arbitrary sizes, charge distributions (arbitrary multipole moments), and dielectric constants; and 2) a system of charged planes that represent the close approach of charged biomolecules. We will show that asymmetric screening, the extra repulsion between charged dielectric objects in a high dielectric constant solvent that was discovered in the ion-free situation, is still present when ions are included. We will discuss the importance of many-body effects, which are included in the present theory but not in commonly used pairwise approximations. We will also briefly indicate a pathway to investigating ion-specific effects (the Hoffmeister effect) in which ions with the same charge have different behavior. And we will also briefly mention efforts to extend the comparison of classical electrostatic interactions to quantum calculations from S type atoms to more a more general setting.